From e029607f88ebc8cd027663b8a5e18ca39b8060c4 Mon Sep 17 00:00:00 2001 From: Paul Harrison Date: Fri, 11 Aug 2023 15:44:33 +0100 Subject: [PATCH] Build and run Jupyter in a Docker container This commit will allow you to: - Create a sample dataset. - Build a Docker container in which to run Jupyter. - Run Jupyter Lab in collaboration mode, making it available at `localhost:8888`. --- .gitignore | 219 ++++ Dockerfile | 9 + LICENSE | 674 ++++++++++ Makefile | 15 + README.md | 36 + data/.gitkeep | 0 notebooks/interview.ipynb | 145 +++ poetry.lock | 2461 +++++++++++++++++++++++++++++++++++++ pyproject.toml | 22 + src/interview/__init__.py | 5 + src/interview/data.py | 10 + 11 files changed, 3596 insertions(+) create mode 100644 .gitignore create mode 100644 Dockerfile create mode 100644 LICENSE create mode 100644 Makefile create mode 100644 README.md create mode 100644 data/.gitkeep create mode 100644 notebooks/interview.ipynb create mode 100644 poetry.lock create mode 100644 pyproject.toml create mode 100644 src/interview/__init__.py create mode 100644 src/interview/data.py diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..5b2a322 --- /dev/null +++ b/.gitignore @@ -0,0 +1,219 @@ +.vscode +.idea +.jupyter_ystore.db +requirements.txt +data/* +!data/.gitkeep + +# Created by https://www.toptal.com/developers/gitignore/api/asdf,python,jupyternotebooks,vim +# Edit at https://www.toptal.com/developers/gitignore?templates=asdf,python,jupyternotebooks,vim + +### asdf ### +/.tool-versions + +### JupyterNotebooks ### +# gitignore template for Jupyter Notebooks +# website: http://jupyter.org/ + +.ipynb_checkpoints +*/.ipynb_checkpoints/* + +# IPython +profile_default/ +ipython_config.py + +# Remove previous ipynb_checkpoints +# git rm -r .ipynb_checkpoints/ + +### Python ### +# Byte-compiled / optimized / DLL files +__pycache__/ +*.py[cod] +*$py.class + +# C extensions +*.so + +# Distribution / packaging +.Python +build/ +develop-eggs/ +dist/ +downloads/ +eggs/ +.eggs/ +lib/ +lib64/ +parts/ +sdist/ +var/ +wheels/ +share/python-wheels/ +*.egg-info/ +.installed.cfg +*.egg +MANIFEST + +# PyInstaller +# Usually these files are written by a python script from a template +# before PyInstaller builds the exe, so as to inject date/other infos into it. +*.manifest +*.spec + +# Installer logs +pip-log.txt +pip-delete-this-directory.txt + +# Unit test / coverage reports +htmlcov/ +.tox/ +.nox/ +.coverage +.coverage.* +.cache +nosetests.xml +coverage.xml +*.cover +*.py,cover +.hypothesis/ +.pytest_cache/ +cover/ + +# Translations +*.mo +*.pot + +# Django stuff: +*.log +local_settings.py +db.sqlite3 +db.sqlite3-journal + +# Flask stuff: +instance/ +.webassets-cache + +# Scrapy stuff: +.scrapy + +# Sphinx documentation +docs/_build/ + +# PyBuilder +.pybuilder/ +target/ + +# Jupyter Notebook + +# IPython + +# pyenv +# For a library or package, you might want to ignore these files since the code is +# intended to run in multiple environments; otherwise, check them in: +# .python-version + +# pipenv +# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. +# However, in case of collaboration, if having platform-specific dependencies or dependencies +# having no cross-platform support, pipenv may install dependencies that don't work, or not +# install all needed dependencies. +#Pipfile.lock + +# poetry +# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control. +# This is especially recommended for binary packages to ensure reproducibility, and is more +# commonly ignored for libraries. +# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control +#poetry.lock + +# pdm +# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control. +#pdm.lock +# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it +# in version control. +# https://pdm.fming.dev/#use-with-ide +.pdm.toml + +# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm +__pypackages__/ + +# Celery stuff +celerybeat-schedule +celerybeat.pid + +# SageMath parsed files +*.sage.py + +# Environments +.env +.venv +env/ +venv/ +ENV/ +env.bak/ +venv.bak/ + +# Spyder project settings +.spyderproject +.spyproject + +# Rope project settings +.ropeproject + +# mkdocs documentation +/site + +# mypy +.mypy_cache/ +.dmypy.json +dmypy.json + +# Pyre type checker +.pyre/ + +# pytype static type analyzer +.pytype/ + +# Cython debug symbols +cython_debug/ + +# PyCharm +# JetBrains specific template is maintained in a separate JetBrains.gitignore that can +# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore +# and can be added to the global gitignore or merged into this file. For a more nuclear +# option (not recommended) you can uncomment the following to ignore the entire idea folder. +#.idea/ + +### Python Patch ### +# Poetry local configuration file - https://python-poetry.org/docs/configuration/#local-configuration +poetry.toml + +# ruff +.ruff_cache/ + +# LSP config files +pyrightconfig.json + +### Vim ### +# Swap +[._]*.s[a-v][a-z] +!*.svg # comment out if you don't need vector files +[._]*.sw[a-p] +[._]s[a-rt-v][a-z] +[._]ss[a-gi-z] +[._]sw[a-p] + +# Session +Session.vim +Sessionx.vim + +# Temporary +.netrwhist +*~ +# Auto-generated tag files +tags +# Persistent undo +[._]*.un~ + +# End of https://www.toptal.com/developers/gitignore/api/asdf,python,jupyternotebooks,vim + diff --git a/Dockerfile b/Dockerfile new file mode 100644 index 0000000..2cbfb79 --- /dev/null +++ b/Dockerfile @@ -0,0 +1,9 @@ +FROM python:3.11 + +WORKDIR /app + +COPY requirements.txt ./requirements.txt +COPY notebooks/interview.ipynb ./notebooks/interview.ipynb +COPY data/iris.csv ./data/iris.csv + +RUN pip install -r requirements.txt diff --git a/LICENSE b/LICENSE new file mode 100644 index 0000000..f288702 --- /dev/null +++ b/LICENSE @@ -0,0 +1,674 @@ + GNU GENERAL PUBLIC LICENSE + Version 3, 29 June 2007 + + Copyright (C) 2007 Free Software Foundation, Inc. + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + + Preamble + + The GNU General Public License is a free, copyleft license for +software and other kinds of works. + + The licenses for most software and other practical works are designed +to take away your freedom to share and change the works. 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If the +Program specifies that a certain numbered version of the GNU General +Public License "or any later version" applies to it, you have the +option of following the terms and conditions either of that numbered +version or of any later version published by the Free Software +Foundation. If the Program does not specify a version number of the +GNU General Public License, you may choose any version ever published +by the Free Software Foundation. + + If the Program specifies that a proxy can decide which future +versions of the GNU General Public License can be used, that proxy's +public statement of acceptance of a version permanently authorizes you +to choose that version for the Program. + + Later license versions may give you additional or different +permissions. However, no additional obligations are imposed on any +author or copyright holder as a result of your choosing to follow a +later version. + + 15. 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Interpretation of Sections 15 and 16. + + If the disclaimer of warranty and limitation of liability provided +above cannot be given local legal effect according to their terms, +reviewing courts shall apply local law that most closely approximates +an absolute waiver of all civil liability in connection with the +Program, unless a warranty or assumption of liability accompanies a +copy of the Program in return for a fee. + + END OF TERMS AND CONDITIONS + + How to Apply These Terms to Your New Programs + + If you develop a new program, and you want it to be of the greatest +possible use to the public, the best way to achieve this is to make it +free software which everyone can redistribute and change under these terms. + + To do so, attach the following notices to the program. It is safest +to attach them to the start of each source file to most effectively +state the exclusion of warranty; and each file should have at least +the "copyright" line and a pointer to where the full notice is found. + + + Copyright (C) + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + +Also add information on how to contact you by electronic and paper mail. + + If the program does terminal interaction, make it output a short +notice like this when it starts in an interactive mode: + + Copyright (C) + This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. + This is free software, and you are welcome to redistribute it + under certain conditions; type `show c' for details. + +The hypothetical commands `show w' and `show c' should show the appropriate +parts of the General Public License. Of course, your program's commands +might be different; for a GUI interface, you would use an "about box". + + You should also get your employer (if you work as a programmer) or school, +if any, to sign a "copyright disclaimer" for the program, if necessary. +For more information on this, and how to apply and follow the GNU GPL, see +. + + The GNU General Public License does not permit incorporating your program +into proprietary programs. If your program is a subroutine library, you +may consider it more useful to permit linking proprietary applications with +the library. If this is what you want to do, use the GNU Lesser General +Public License instead of this License. But first, please read +. diff --git a/Makefile b/Makefile new file mode 100644 index 0000000..0ba629a --- /dev/null +++ b/Makefile @@ -0,0 +1,15 @@ +.DEFAULT_GOAL := help +SHELL := /bin/bash + +.PHONY: build +build: ## Build the Docker image + @poetry export --only main --output requirements.txt + @docker build --tag ds-interview . + +.PHONY: help +help: ## Show all available commands + @awk 'BEGIN {FS = ":.*##"; printf "Usage: make \033[36m\033[0m\n"} /^[a-zA-Z_-]+:.*?##/ { printf " \033[36m%-36s\033[0m %s\n", $$1, $$2 } /^##@/ { printf "\n\033[1m%s\033[0m\n", substr($$0, 5) } ' $(MAKEFILE_LIST); + +.PHONY: run +run: ## Run the Docker image + @docker run --rm -it -p "8888:8888" ds-interview jupyter lab --collaborative --no-browser --allow-root --ip "0.0.0.0" --ServerApp.allow_remote_access true --config Xfrozen_modules=off diff --git a/README.md b/README.md new file mode 100644 index 0000000..f2bd9e7 --- /dev/null +++ b/README.md @@ -0,0 +1,36 @@ +# Data Science Pair Interview + +## Requirements + +- Python 3.11 (you can change this in the `pyproject.toml` file) +- [Docker](https://www.docker.com/) +- [Ngrok](https://ngrok.com/) +- [GNU Make](https://www.gnu.org/software/make/) + +## Usage + +### Get Setup + +Create your local environment with + +```shell +poetry install +``` + +### Make you Dataset + +`src/interview/data.py` contains an example function to build the classic [Iris dataset](https://scikit-learn.org/stable/auto_examples/datasets/plot_iris_dataset.html). You can build this with + +```shell +poetry run make-data +``` + +### Run the Notebook with Docker + +Build the container and run the notebook with + +```shell +make build run +``` + +This will copy your data and notebook to the container, install any packages you specified in your `pyproject.toml` file, then run the notebook in the container. Jupyter will be available on port 8888. diff --git a/data/.gitkeep b/data/.gitkeep new file mode 100644 index 0000000..e69de29 diff --git a/notebooks/interview.ipynb b/notebooks/interview.ipynb new file mode 100644 index 0000000..04e94f9 --- /dev/null +++ b/notebooks/interview.ipynb @@ -0,0 +1,145 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 1, + "id": "b6e46c69-04f1-4447-a1db-a5cce38d636a", + "metadata": {}, + "outputs": [], + "source": [ + "from pathlib import Path\n", + "\n", + "import pandas as pd\n", + "\n", + "DATA_PATH = Path(\"../data/iris.csv\")\n", + "\n", + "df = pd.read_csv(DATA_PATH)" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "6dd33499-35a2-41d5-bbc9-a19f42ed6e01", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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+++ b/src/interview/__init__.py @@ -0,0 +1,5 @@ +from pathlib import Path + + +DATA_FOLDER = Path(__file__).parent.parent.parent / "data" + diff --git a/src/interview/data.py b/src/interview/data.py new file mode 100644 index 0000000..9c04597 --- /dev/null +++ b/src/interview/data.py @@ -0,0 +1,10 @@ +from sklearn.datasets import load_iris + +from interview import DATA_FOLDER + + +def make_data() -> None: + """Make dataset for interview.""" + data, target = load_iris(return_X_y=True, as_frame=True) + data.join(target).to_csv(DATA_FOLDER / "iris.csv", header=True, index=False) +